Greenport has some great lodging options. My recommendations include:
Harborfront Inn at Greenport: This is a larger hotel of 35 rooms on the water and looks excellent. It is an easy walk to the ferry, to the shops and to the restaurants downtown. It is under the same ownership as the popular Kontokosta Winery.
North Fork Table and Inn: At 57225 Main Road, in Southold, and a short drive from Greenport, is this small inn with a wonderful restaurant. The rooms have been renovated.
The Cove Place Inn is now the Agua Beach Hotel and looks like a great spot on the water at 15 Bay Ave. in Aquebogue NY. They also have the colorful American Beach Hotel in Greenport with a bar, restaurant and boutique.
I just read about the newly renovated Sound View Greenport which is a hotel and restaurant located on the water. It has a great nautical design with deluxe rooms, studio suites and junior suites. I will definitely check it out on my next trip.
Other spots I recently read about include Lin Beach House located in the former Shady Lady house now with a bar, and Greenporter Hotel.
A new property that just opened is The Menhaden, a contemporary boutique hotel with 16 rooms at 207 Front St. They have sleek, contemporary rooms, a rooftop bar and an onsite restaurant Demarchelier for French cuisine and the Merchant’s Wife cafe for breakfast, lunch or snacks.